{
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  "Package": "clValid",
  "Version": "0.7",
  "Date": "2021-02-13",
  "Title": "Validation of Clustering Results",
  "Author": "Guy Brock <guy.brock@louisville.edu>, Vasyl Pihur\n<vpihur@gmail.com>, Susmita Datta\n<susmita.datta@louisville.edu>, and Somnath Datta\n<somnath.datta@louisville.edu>",
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  "Description": "Statistical and biological validation of clustering\nresults. This package implements Dunn Index, Silhouette,\nConnectivity, Stability, BHI and BSI. Further information can\nbe found in Brock, G et al. (2008) <doi:\n10.18637/jss.v025.i04>.",
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    "BSI",
    "clusterMethods",
    "clusters",
    "clValid",
    "connectivity",
    "dunn",
    "getRanksWeights",
    "matchGO",
    "measNames",
    "measures",
    "nClusters",
    "optimalScores",
    "plot",
    "print",
    "readAnnotationFile",
    "show",
    "sota",
    "stability",
    "summary"
  ],
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    {
      "name": "mouse",
      "title": "Mouse Mesenchymal Cells",
      "object": "mouse",
      "file": "mouse.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ID",
        "M1",
        "M2",
        "M3",
        "NC1",
        "NC2",
        "NC3",
        "FC"
      ],
      "rows": 147,
      "table": true,
      "tojson": true
    }
  ],
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    {
      "page": "annotationListToMatrix",
      "title": "Change annotation list to matrix",
      "topics": [
        "annotationListToMatrix"
      ]
    },
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      "page": "BHI",
      "title": "Biological Homogeneity Index",
      "topics": [
        "BHI"
      ]
    },
    {
      "page": "BSI",
      "title": "Biological Stability Index",
      "topics": [
        "BSI"
      ]
    },
    {
      "page": "clValid",
      "title": "Validate Cluster Results",
      "topics": [
        "clValid"
      ]
    },
    {
      "page": "clValid-class",
      "title": "Class \"clValid\"",
      "topics": [
        "clusterMethods",
        "clusterMethods,clValid-method",
        "clusters",
        "clusters,clValid-method",
        "clValid-class",
        "clValidObj",
        "measNames",
        "measNames,clValid-method",
        "measures",
        "measures,clValid-method",
        "nClusters",
        "nClusters,clValid-method",
        "optimalScores",
        "optimalScores,clValid-method",
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        "print,clValid-method",
        "show,clValid-method",
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      "page": "connectivity",
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        "connectivity"
      ]
    },
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      "page": "dunn",
      "title": "Dunn Index",
      "topics": [
        "dunn"
      ]
    },
    {
      "page": "getRanksWeights",
      "title": "Extract ranks and weights from clValid object",
      "topics": [
        "getRanksWeights"
      ]
    },
    {
      "page": "mouse",
      "title": "Mouse Mesenchymal Cells",
      "topics": [
        "mouse"
      ]
    },
    {
      "page": "plot.sota",
      "title": "Plot Function for a SOTA Object",
      "topics": [
        "plot.sota"
      ]
    },
    {
      "page": "print.sota",
      "title": "Print Function for a SOTA Object",
      "topics": [
        "print.sota"
      ]
    },
    {
      "page": "readAnnotationFile",
      "title": "Read in biological annotation files from external file",
      "topics": [
        "readAnnotationFile"
      ]
    },
    {
      "page": "sota",
      "title": "Self-organizing Tree Algorithm (SOTA)",
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        "sota"
      ]
    },
    {
      "page": "stability",
      "title": "Stability Measures",
      "topics": [
        "AD",
        "ADM",
        "APN",
        "FOM",
        "stability"
      ]
    }
  ],
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    "cluster",
    "MASS"
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      "created": "2014-03-24",
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