Introduction | Validation Measures | Clustering Algorithms | Example - Mouse Mesenchymal Cells | Discussion
Package: clValid 0.7
clValid: Validation of Clustering Results
Statistical and biological validation of clustering results. This package implements Dunn Index, Silhouette, Connectivity, Stability, BHI and BSI. Further information can be found in Brock, G et al. (2008) <doi:10.18637/jss.v025.i04>.
Authors:
clValid_0.7.tar.gz
clValid_0.7.zip(r-4.7-any)clValid_0.7.zip(r-4.6-any)clValid_0.7.zip(r-4.5-any)
clValid_0.7.tgz(r-4.6-any)clValid_0.7.tgz(r-4.5-any)
clValid_0.7.tar.gz(r-4.7-any)clValid_0.7.tar.gz(r-4.6-any)
clValid_0.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
clValid/json (API)
| # Install 'clValid' in R: |
| install.packages('clValid', repos = c('https://vpihur.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- mouse - Mouse Mesenchymal Cells
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:92b8a8219f. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 159 | ||
| source / vignettes | OK | 253 | ||
| linux-release | OK | 155 | ||
| macos-release | OK | 144 | ||
| macos-oldrel | OK | 102 | ||
| windows-devel | OK | 112 | ||
| windows-release | OK | 85 | ||
| windows-oldrel | OK | 113 | ||
| wasm-release | OK | 129 |
Exports:annotationListToMatrixBHIBSIclusterMethodsclustersclValidconnectivitydunngetRanksWeightsmatchGOmeasNamesmeasuresnClustersoptimalScoresplotprintreadAnnotationFileshowsotastabilitysummary
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Change annotation list to matrix | annotationListToMatrix |
| Biological Homogeneity Index | BHI |
| Biological Stability Index | BSI |
| Validate Cluster Results | clValid |
| Class "clValid" | clusterMethods clusterMethods,clValid-method clusters clusters,clValid-method clValid-class clValidObj measNames measNames,clValid-method measures measures,clValid-method nClusters nClusters,clValid-method optimalScores optimalScores,clValid-method plot,clValid,missing-method print,clValid-method show,clValid-method summary,clValid-method |
| Connectivity Measure | connectivity |
| Dunn Index | dunn |
| Extract ranks and weights from clValid object | getRanksWeights |
| Mouse Mesenchymal Cells | mouse |
| Plot Function for a SOTA Object | plot.sota |
| Print Function for a SOTA Object | print.sota |
| Read in biological annotation files from external file | readAnnotationFile |
| Self-organizing Tree Algorithm (SOTA) | sota |
| Stability Measures | AD ADM APN FOM stability |