Package: clValid 0.7
clValid: Validation of Clustering Results
Statistical and biological validation of clustering results. This package implements Dunn Index, Silhouette, Connectivity, Stability, BHI and BSI. Further information can be found in Brock, G et al. (2008) <doi:10.18637/jss.v025.i04>.
Authors:
clValid_0.7.tar.gz
clValid_0.7.zip(r-4.5)clValid_0.7.zip(r-4.4)clValid_0.7.zip(r-4.3)
clValid_0.7.tgz(r-4.5-any)clValid_0.7.tgz(r-4.4-any)clValid_0.7.tgz(r-4.3-any)
clValid_0.7.tar.gz(r-4.5-noble)clValid_0.7.tar.gz(r-4.4-noble)
clValid_0.7.tgz(r-4.4-emscripten)clValid_0.7.tgz(r-4.3-emscripten)
clValid.pdf |clValid.html✨
clValid/json (API)
| # Install 'clValid' in R: |
| install.packages('clValid', repos = c('https://vpihur.r-universe.dev', 'https://cloud.r-project.org')) |
- mouse - Mouse Mesenchymal Cells
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:92b8a8219f. Checks:9 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 21 2025 |
| R-4.5-win | OK | Mar 21 2025 |
| R-4.5-mac | OK | Mar 21 2025 |
| R-4.5-linux | OK | Mar 21 2025 |
| R-4.4-win | OK | Mar 21 2025 |
| R-4.4-mac | OK | Mar 21 2025 |
| R-4.4-linux | OK | Mar 21 2025 |
| R-4.3-win | OK | Mar 21 2025 |
| R-4.3-mac | OK | Mar 21 2025 |
Exports:annotationListToMatrixBHIBSIclusterMethodsclustersclValidconnectivitydunngetRanksWeightsmatchGOmeasNamesmeasuresnClustersoptimalScoresplotprintreadAnnotationFileshowsotastabilitysummary
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Change annotation list to matrix | annotationListToMatrix |
| Biological Homogeneity Index | BHI |
| Biological Stability Index | BSI |
| Validate Cluster Results | clValid |
| Class "clValid" | clusterMethods clusterMethods,clValid-method clusters clusters,clValid-method clValid-class clValidObj measNames measNames,clValid-method measures measures,clValid-method nClusters nClusters,clValid-method optimalScores optimalScores,clValid-method plot,clValid,missing-method print,clValid-method show,clValid-method summary,clValid-method |
| Connectivity Measure | connectivity |
| Dunn Index | dunn |
| Extract ranks and weights from clValid object | getRanksWeights |
| Mouse Mesenchymal Cells | mouse |
| Plot Function for a SOTA Object | plot.sota |
| Print Function for a SOTA Object | print.sota |
| Read in biological annotation files from external file | readAnnotationFile |
| Self-organizing Tree Algorithm (SOTA) | sota |
| Stability Measures | AD ADM APN FOM stability |
